EuGene configuration file examples
| File type | Species | Reference | File | |
|---|---|---|---|---|
| EuGene v1.5 configuration file | Medicago truncatula | Pecrix Y et al. Whole-genome landscape of Medicago truncatula symbiotic genes. Nature Plants (2018) | egnep.v1.5.MtrunA17r5.0-ANR.20170220.cfg | |
| "AnnotaStruct" configuration file to integrate ChIP-Seq data | Medicago truncatula | Pecrix Y et al. Whole-genome landscape of Medicago truncatula symbiotic genes. Nature Plants (2018) | plugin_AnnotaStruct_H3K9Ac.cfg | |
| "AnnotaStruct" data file: ChIP-Seq peak calling results (GFF3) | Medicago truncatula | Pecrix Y et al. Whole-genome landscape of Medicago truncatula symbiotic genes. Nature Plants (2018) | MtrunA17r5.0-ANR.A17_H3K9Ac.gff3 | |
| "AnnotaStruct" configuration file to integrate proteomics data | Medicago truncatula | Pecrix Y et al. Whole-genome landscape of Medicago truncatula symbiotic genes. Nature Plants (2018) | plugin_AnnotaStruct_Proteomics.cfg | |
| "AnnotaStruct" data file: proteomics mapping results (GFF3) | Medicago truncatula | Pecrix Y et al. Whole-genome landscape of Medicago truncatula symbiotic genes. Nature Plants (2018) | MtrunA17r5.0-ANR.MQ_ALL_peptides_l6.gff3 |
